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Neurophysiological signals are often noisy, non-sinusoidal, and consist of transient bursts. Extraction and analysis of oscillatory features (such as waveform shape and cross-frequency coupling) in such datasets remains difficult. This limits our understanding of brain dynamics and its functional importance. Here, we develop Iterated Masking Empirical Mode Decomposition (itEMD), a method designed to decompose noisy and transient single channel data into relevant oscillatory modes in a flexible, fully data-driven way without the need for manual tuning. Based on Empirical Mode Decomposition (EMD), this technique can extract single-cycle waveform dynamics through phase-aligned instantaneous frequency. We test our method by extensive simulations across different noise, sparsity, and non-sinusoidality conditions. We find itEMD significantly improves the separation of data into distinct non-sinusoidal oscillatory components and robustly reproduces waveform shape across a wide range of relevant parameters. We further validate the technique on multi-modal, multi-species electrophysiological data. Our itEMD extracts known rat hippocampal theta waveform asymmetry and identifies subject-specific human occipital alpha without any prior assumptions about the frequencies contained in the signal. Notably, it does so with significantly less mode mixing compared to existing EMD-based methods. By reducing mode mixing and simplifying interpretation of EMD results, itEMD will enable new analyses into functional roles of neural signals in behaviour and disease.

Original publication




Journal article


Cold Spring Harbor Laboratory

Publication Date