Research
Teaching
- MRI Graduate Teaching Programme (internal Oxford course)
- FSL Course (external course)
FSL - FMRIB Software Library
Mark Jenkinson
BSc BE DPhil
Professor of Neuroimaging
- Head of Structural Modelling and Analysis
Research Summary
Structural Modelling and Analysis Group
There are two major themes to my research: (i) multimodal modelling of populations to describe disease processes and apply to individual patient diagnoses; and (ii) structural segmentation and analysis of brain anatomy and pathology, especially sub-cortical structures, lesions and their relationship with disease.
Awards, Training and Qualifications
- 2014- 2016 Thomson Reuters' list of Highly Cited Researchers
- 2005- 2010 David Phillips Fellowship, BBSRC
- 1995- 1999 DPhil, University of Oxford
- 1989- 1993 BE - Electrical and Electronic (Hons I),University of Adelaide
- 1989- 1994 BSc (Hons I), University of Adelaide
Recent publications
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Deep-diffeomorphic networks for conditional brain templates
Preprint
Whitbread L. et al, (2024)
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Anatomically plausible segmentations: Explicitly preserving topology through prior deformations
Journal article
Wyburd MK. et al, (2024), Medical Image Analysis, 103222 - 103222
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niimath and fslmaths: replication as a method to enhance popular neuroimaging tools
Journal article
Rorden C. et al, (2024), Aperture Neuro, 4
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BIANCA-MS: An optimized tool for automated multiple sclerosis lesion segmentation.
Journal article
Gentile G. et al, (2023), Hum Brain Mapp, 44, 4893 - 4913
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A resource for development and comparison of multi-modal brain 3T MRI harmonisation approaches
Preprint
Warrington S. et al, (2023)