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Monitoring Tasks
How to monitor the progress of your submitted job
Troubleshooting
How to troubleshoot failed jobs
Partitions
Available SLURM partitions
Compute Cluster
Submitting jobs to the compute cluster
Getting Started
Initial setup of your account
The BMRC Compute Cluster
Information on compute facilities hosted by BioMedical Research Computing (BMRC)
Submitting A Job
Submitting a job to the FMRIB cluster
Monitoring Tasks
How to check on the progress of your jobs
Troubleshooting
How to terminate jobs and solve submission/runtime problems
Available Queues
What queues are available and what to use them for
Miscellaneous Techniques
Other potentially useful submission options or techniques
fsl_sub Environment Variables
Environment variables that can be set to control fsl_sub submitted tasks
MATLAB Tasks
How to submit non-interactive MATLAB scripts to the queues
Array Jobs
How to submit independent 'clone' tasks for running in parallel
Submitting Serial Jobs (Job Holds)
How to submit pipeline stages such that they wait for their predecessor to complete
GPU Tasks
How to request a GPU for your job