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BMRC Storage
Users of the BMRC compute cluster have twol storage options open to them, a high-performance research data file system attached to the BMRC compute cluster and a read-only 'archive' platform
Data backup
Information about backing up data
GUI Tools
Options for scp/sftp with a GUI applications
Secure Copy Tools
How to transfer files using secure transfer mechanisms including scp, sftp and rsync
macOS SMB
Connecting to the SMB shares from a macOS computer
Linux
Connection to the SMB shares from Linux
Windows
Connecting to the SMB shares from a Windows computer
SMB (Windows file sharing)
How to access FMRIB file servers over SMB
fsl_sub Environment variables
Environment variables that can be set to control fsl_sub submitted tasks
Configuring fsl_sub
How to change fsl_sub's configuration for all jobs you run
MATLAB Tasks
How to submit non-interactive MATLAB scripts to the queues
Multi-Threaded Software
How to request a multi-threaded slot and how to ensure your software only uses the CPU cores it has been allocated
GPU Tasks
How to request a GPU for your job
Array Jobs
How to submit independent 'clone' tasks for running in parallel
Advanced Usage
More advanced techniques for submitting jobs, e.g. GPU, array and MATLAB tasks and full fsl_sub usage information
Monitoring Tasks
How to monitor the progress of your submitted job
Troubleshooting
How to troubleshoot failed jobs
Partitions
Available SLURM partitions